Let's say I breed a homozygous motley and a homozygous hypo.. (Would homozygous just mean they have the phenotype of motley and hypo?) ...and they produce 100% het hypo, het motley. Does this mean they would all be either het hypo OR het motley, or het hypo AND het motley?? Also does het only refer to genotype.. Could/would the phenotype be affected with this pairing? Could a hypo motley be produced? Or would they all be motleys, hypos, and normals...? Or just normals het for hypo or motley??
Handbook - Genetics Home Reference
Definitions:
Homozygous = the two genes in a gene pair are the same.
Heterozygous = the two genes in a gene pair are not the same.
Genotype = the identity of the genes.
Phenotype = the appearance produced by the genes interating with the environment.
Homozygous and heterozygous only refer to genotype. Those four words are so poorly understood among the general run of herpers that I often list both phenotypes and genotypes to be sure everyone understands. As in, "If a super motley boa (with a pair of motley genes) is mated to a super hypo boa (with a pair or hypo genes) ...."
You are now going to be dumped in the middling deep part of the genetics swimming hole. Consider yourself warned.

Hypo is dominant to its corresponding normal gene. Motley is codominant to its corresponding normal gene.
As Zaphod42 wrote, hypo motley boas have been produced. And they have been bred to normal boas. The claim is that hypo motley mated to normal produces only hypos and motleys. This could indicate that a hypo motley snake has one gene pair made up of a hypo gene and a motley gene. Or it could indicate that there are two gene pairs (a hypo gene with a normal gene in one pair and a motley gene with a normal gene in the other pair). If two gene pairs, they are closely linked in one pair of chromosomes. I have not seen enough information to make up my mind.
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